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ren-lab / deltaSVM

Codes to run deltaSVM models to predict allelic TF binding
GNU General Public License v3.0
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the resources files link is empty #11

Closed tyrptone closed 1 year ago

tyrptone commented 2 years ago

The resources files link 'http://renlab.sdsc.edu/yunjiang/deltaSVM/' is empty, running the scripts/deltasvm_subset_multi needs resources/models.weights.txt and resources/threhsolds.pbs.tsv, and resources/threhsolds.obs.tsv is in need for later script. Can you send those file again to the resources files link or just tell us how to make those file by ourself ?

YayanFeng55 commented 1 year ago

The resources files link 'http://renlab.sdsc.edu/yunjiang/deltaSVM/' is empty, running the scripts/deltasvm_subset_multi needs resources/models.weights.txt and resources/threhsolds.pbs.tsv, and resources/threhsolds.obs.tsv is in need for later script. Can you send those file again to the resources files link or just tell us how to make those file by ourself ?

Hi there,

Have you got the resources files now ? I got the same issue.

Thanks Yayan

yjqiu commented 1 year ago

@tyrptone @YayanFeng55

Sorry for the broken link and delayed reply. We have some problems with our server and I put the files in Dropbox for now. You can find the links below. You may use the standard hg19 reference genome in fasta format for the reference genome.

https://www.dropbox.com/s/bde2emzm9j3n1y4/models.weights.txt.gz?dl=0 https://www.dropbox.com/s/o04zm5c9xao907b/threhsolds.obs.tsv?dl=0 https://www.dropbox.com/s/rp9nb7gltdxgqkg/threhsolds.pbs.tsv?dl=0

We will fix the link as soon as possible and let me know if you have any other problems.