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ren-lab / deltaSVM

Codes to run deltaSVM models to predict allelic TF binding
GNU General Public License v3.0
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Increase thread number from 1 to 16 makes program much slower #4

Closed rmd13 closed 3 years ago

rmd13 commented 3 years ago

Hi,

To speed up the process, I set the shell script's all the -T parameter to 16 (because trial shows only 1,4,16 allowed), however, the calculation is much slower and cannot finish after long time. Is there a possible reason for this? Thanks

yjqiu commented 3 years ago

For issues with gkmpredict, you may need to consult authors of gkmpredict. Or a better way to speed up is to run gkmpredict for multiple models parallel. But you will need to modify the script yourself.

yjqiu commented 3 years ago

Close the issue due to no follow up. Feel free to reopen if you have additional questions.