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renaud / neuroNER

named entity recognizer for neuronal cells, based on UIMA Ruta rules
GNU Lesser General Public License v3.0
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add cre and Cre to protein triggers #16

Closed stripathy closed 9 years ago

stripathy commented 9 years ago

use cases: PV-cre mouse Ntsr1-Cre expressing cells

renaud commented 9 years ago

PV-cre mouse: no trigger, so that will be recognized as 

http://localhost:9600/annotate/neuroner?text=PV-cre%20mouse

  "ProteinName" : [
    {"sofa" : 1,  "begin" : 0,  "end" : 2,  "ontologyId" : "NCBI_GENE:19293" }
  ], 
  "ProteinProp" : [
    {"sofa" : 1,  "begin" : 0,  "end" : 6,  "ontologyId" : "PV" }
  ], 
  "ProteinTrigger" : [
    {"sofa" : 1,  "begin" : 3,  "end" : 6 }
  ], 
  "Species" : [
    {"sofa" : 1,  "begin" : 7,  "end" : 12,  "ontologyId" : "ncbi:10090" }
  ]