After defining the Ephys Trigger term, we need to find EphysProp terms which come before or after the trigger word, like those in the modifying terms list below.
modifying terms:
continuous
irregular
regular
spontaneous
delay/late
classical
intrinsic
fast
non-fast
But unlike for Protein, we need to give an ontology id for the terms in the EphysTrigger too (if a neuron is characterized as bursting, we need to know that too).
I did split the Ephys obo files in two, please validate them (in neuroNER/resources/bluima/neuroner/)
hbp_electrophysiology_ontology.robo
hbp_electrophysiology-triggers_ontology.robo
In them, I reordered the ids. Please confirm that this is not a problem for you. Else I will roll it back. In the future, we should avoid reordering ids...
Define the following as an electrophysiology trigger:
After defining the Ephys Trigger term, we need to find EphysProp terms which come before or after the trigger word, like those in the modifying terms list below.
modifying terms:
continuous irregular regular spontaneous delay/late classical intrinsic fast non-fast
etc. More terms in the .robo file: https://www.dropbox.com/s/mncj52cme66f66g/hbp_electrophysiology_ontology.robo?dl=0
But unlike for Protein, we need to give an ontology id for the terms in the EphysTrigger too (if a neuron is characterized as bursting, we need to know that too).
Test cases:
[fast regular-spiking] cell [MOD] [MOD] [TRIG]
[adapting] cell []
non-accommodating cell non-accomodating cell irregular spiking cell irregular bursting cell irregularly spiking cell cell irregularly bursting slowly adapting cell
slow non-adapting spiking cell [mod][trig?][trig][neuron trigger]