renaud / neuroNER

named entity recognizer for neuronal cells, based on UIMA Ruta rules
GNU Lesser General Public License v3.0
7 stars 8 forks source link

visualization idea for neuroNER neuron relationships #25

Open stripathy opened 9 years ago

stripathy commented 9 years ago

Here's an idea for comparing BBP to neurolex neuron types: represent the relationships and ontology instances heirarchically.

img_20150730_094408

I'm not sure how to actually implement this (maybe something like a trie?), but i think it's a good way of visalizing. If we liked this, we could add in the literature-mined results too, like (50 neuron mentions found for 'basket cell' and 2 found for 'nest basket cell', etc).

renaud commented 9 years ago

Not sure i understand it all but I very much like the idea.

Renaud Richardet +41 78 675 9501 [sent from my phone therefore short]

On 30 Jul 2015, at 19:17, Shreejoy Tripathy notifications@github.com wrote:

Here's an idea for comparing BBP to neurolex neuron types: represent the relationships and ontology instances heirarchically.

I'm not sure how to actually implement this (maybe something like a trie?), but i think it's a good way of visalizing. If we liked this, we could add in the literature-mined results too, like (50 neuron mentions found for 'basket cell' and 2 found for 'nest basket cell', etc).

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