renaud / neuroNER

named entity recognizer for neuronal cells, based on UIMA Ruta rules
GNU Lesser General Public License v3.0
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traverse layer ontology and return major parts along with subparts #42

Closed stripathy closed 8 years ago

stripathy commented 8 years ago

e.g., we need to indicate that layer 5a is a child of layer 5 is a child of layer 5-6

Layer 5a somatosensory barrel cortex pyramidal neurons [0, 8, 'Layer 5a', u'HBP_LAYER:0000050'] [9, 22, 'somatosensory', u'Function'] [23, 36, 'barrel cortex', u'ABA_REGION:329'] [37, 46, 'pyramidal', u'HBP_MORPHOLOGY:0000001'] [47, 54, 'neurons', u'NeuronTrigger']