Closed stripathy closed 8 years ago
e.g. Lateral hypothalamus GAD65-GFP low-threshold spiking neurons [0, 7, 'Lateral', u'UNKN_REGION:15'] [8, 20, 'hypothalamus', u'UNKN_REGION:5443'] [8, 20, 'hypothalamus', u'ABA_REGION:1097'] [21, 27, 'GAD65-', u'NCBI_GENE:14417'] [27, 30, 'GFP', u'Missing'] [31, 44, 'low-threshold', u'HBP_EPHYS:0000110'] [45, 52, 'spiking', u'HBP_EPHYS_TRIGGER:0000003'] [53, 60, 'neurons', u'NeuronTrigger']
and
medial prefrontal cortex stimulated non-fast spiking interneuron in basolateral amygdala [0, 24, 'medial prefrontal cortex', u'UNKN_REGION:491'] [25, 35, 'stimulated', u'Missing'] [36, 44, 'non-fast', u'HBP_EPHYS:0000090'] [40, 44, 'fast', u'HBP_EPHYS:0000080'] [45, 52, 'spiking', u'HBP_EPHYS_TRIGGER:0000003'] [53, 64, 'interneuron', u'NeuronTrigger'] [65, 67, 'in ', 'Missing'] [68, 79, 'basolateral', u'UNKN_REGION:24'] [80, 88, 'amygdala', u'ABA_REGION:278']
one cheap solution is also to eliminate duplicate in the lexical resources (e.g. layer V)
layer V
all these can be dealt in neuroNER python code
e.g. Lateral hypothalamus GAD65-GFP low-threshold spiking neurons [0, 7, 'Lateral', u'UNKN_REGION:15'] [8, 20, 'hypothalamus', u'UNKN_REGION:5443'] [8, 20, 'hypothalamus', u'ABA_REGION:1097'] [21, 27, 'GAD65-', u'NCBI_GENE:14417'] [27, 30, 'GFP', u'Missing'] [31, 44, 'low-threshold', u'HBP_EPHYS:0000110'] [45, 52, 'spiking', u'HBP_EPHYS_TRIGGER:0000003'] [53, 60, 'neurons', u'NeuronTrigger']
and
medial prefrontal cortex stimulated non-fast spiking interneuron in basolateral amygdala [0, 24, 'medial prefrontal cortex', u'UNKN_REGION:491'] [25, 35, 'stimulated', u'Missing'] [36, 44, 'non-fast', u'HBP_EPHYS:0000090'] [40, 44, 'fast', u'HBP_EPHYS:0000080'] [45, 52, 'spiking', u'HBP_EPHYS_TRIGGER:0000003'] [53, 64, 'interneuron', u'NeuronTrigger'] [65, 67, 'in ', 'Missing'] [68, 79, 'basolateral', u'UNKN_REGION:24'] [80, 88, 'amygdala', u'ABA_REGION:278']