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reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit
MIT License
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Coloring PCA plot points by metadata #1

Closed jwill490 closed 4 years ago

jwill490 commented 4 years ago

Hi there,

Is there anyway to color the points in the PCA plots by a metadata attribute without forking the project? For example, I have 4 sample types (fetal12w, fetal13w, adult12w, adult13w) across 29 samples. I'd like the samples to be color-coded by these groups if at all possible.

Thanks! John

reneshbedre commented 4 years ago

Hi John

To answer your questions, I would like to see the data that you would like to PCA plot. As I understood, you have 29 samples and the observations are of four types (fetal12w, fetal13w, adult12w, adult13w). Is it right? If possible, please email me data at reneshbe@gmail.com

mbaddoo commented 3 years ago

Hello- First, this is a great tool! Thanks so much for the documentation. Like jwill490, I too am interested in coloring points in the PCA plots by a metadata attribute. I have 24 samples, 8 observations. I appreciate any assistance you could offer. Thanks again! Melody DEG_hg38.csv