reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit
MIT License
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Pip package 0.9.5 doesn't include all necessary modules (missing adjustText module) #12

Closed claymcleod closed 4 years ago

claymcleod commented 4 years ago

Installing 0.9.5 doesn't include the adjustText module by default.

Example:

conda create -n bioinfokit-test python=3.7 -y
conda activate bioinfokit-test
pip install bioinfokit==0.9.5
python -c 'from bioinfokit import analys'
conda deactivate
conda env remove -n bioinfokit-test

gives the following error at the import step:

#Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Users/cmcleod/conda/envs/bioinfokit-test/lib/python3.7/site-packages/bioinfokit/analys.py", line 6, in <module>
    from bioinfokit.visuz import screeplot, pcaplot, general
  File "/Users/cmcleod/conda/envs/bioinfokit-test/lib/python3.7/site-packages/bioinfokit/visuz.py", line 12, in <module>
    from adjustText import adjust_text
ModuleNotFoundError: No module named 'adjustText'
reneshbedre commented 4 years ago

@claymcleod ,

Thank you for letting me know. I will fix this issue in upcoming release. For now, this issue can be solved by separately installing adjustText.

claymcleod commented 4 years ago

Thanks @reneshbedre.

reneshbedre commented 4 years ago

@claymcleod ,

This issue has been fixed in v0.9.6