Labeling most significant/highest log fold change?

reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit

MIT License

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Labeling most significant/highest log fold change? #14

Closed theclairecamp closed 3 years ago

theclairecamp commented 3 years ago

I was wondering if it is possible to label the values that are above a certain p-value and logfoldchange threshold with in the genenames parameter, instead of having to change the threshold within lfc_thr and pv_thr? Like by using indexes for tubles? Thanks!

reneshbedre commented 3 years ago

Hi @theclairecamp ,

If you set genenames='deg' , it will label all the points of up and down-regulated genes as defined by your threshold lfc_thr and pv_thr. See documentation at https://reneshbedre.github.io/blog/howtoinstall.html#volcano-plot

Let me know if it resolves your issue. Thank you for using bioinfokit for your work.