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reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit
MIT License
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manhatten plot y axis tick labels #17

Closed sabrinacamp2 closed 3 years ago

sabrinacamp2 commented 3 years ago

Hi!

Thank you for this amazing suite of tools. It has made making a manhatten plot a breeze!

I am having some trouble getting my Y-axis tick labels to look right, and I thought maybe you would have some advice. First, I did not specify the ylm argument and looked at the default labeling. There is a lot of number overlap, so then I tried setting the axis limits and intervals with the ylm argument to ylm = (0, 35, 3). It still isn't quite right and I would love your input.

All the best, Sabrina default_params_manhatten manhatten

reneshbedre commented 3 years ago

@sabrinacamp2

Thank you for your feedback about bioinfokit and I am glad that it is useful in your work. Regarding your query, can you please tell me what is the lowest p-value in your dataset? Is it possible for you to share your dataset at reneshbe@gmail.com?

sabrinacamp2 commented 3 years ago

Hi!

The lowest p-value in my dataset is 4.940656e-324. I unfortunately cannot share this dataset.

All the best, Sabrina

reneshbedre commented 3 years ago

@sabrinacamp2

Thank you for providing the information. You have the lowest p-value 4.940656e-324 which becomes 323.30 on minus log10 scale. Please, provide option as ylm=(0, 330, 30). You can change it as it fits your need. Let me know if it works for you.

sabrinacamp2 commented 3 years ago

This worked! Thank you for your quick and helpful response.

Sabrina edited_y_brcavsgnomad