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reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit
MIT License
334 stars 77 forks source link

No images #2

Closed QianjiangHu closed 4 years ago

QianjiangHu commented 4 years ago

Dear all, When I draw a volcano plot using visuz.volcano(), there is no image or error report appear. Does anyone know what is the problem here? Thank you!

image

reneshbedre commented 4 years ago

Hi, I have reproduced the code and it is working fine. The image will not appear on the Jupyter console, but it will be saved in the same folder from where you are executing the code. You can check your current folder path using pwd command on Jupyter. Check the image (volcano.png) in that folder. Let me know if you still have problems.

QianjiangHu commented 4 years ago

Dear @reneshbedre, Thank you so much! I get the figures with your help. However, I would like to ask is it possible that display in the Jupyter console? Thanks!

reneshbedre commented 4 years ago

Hi, Thank you for your suggestion. Currently, it does not support the feature of viewing the graph in the console itself. I will consider adding this feature in the upcoming release.

QianjiangHu commented 4 years ago

That is great! Thanks a lot!

reneshbedre commented 4 years ago

The viewing of the graph in the console itself is supported in v0.5. Please install v0.5 and set show=True to view the graph in the console itself.

QianjiangHu commented 4 years ago

Thanks!!!