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reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit
MIT License
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assertion error for non-significant genes in lfc #55

Closed lraghavendran closed 2 years ago

lraghavendran commented 2 years ago

Is it possible to turn off the assertion check for the presence of non-significant genes. I have some datasets for which I do not see any down-regulated genes at all. I can't create a volcano plot due to this AssertionError: either significant or non-significant genes are missing; try to change lfc_thr or pv_thr to include both significant and non-significant genes

reneshbedre commented 2 years ago

Change the threshold of log fold change and p values just to make a few genes at a significant level (based on your criteria). You can also keep the same color using a color parameter.