Open hpoisner opened 1 year ago
I ran a modified version copying over the relevant functions and its this line here
df = df.loc[pd.to_numeric(df[chr], errors='coerce').sort_values().index]
I commented it out and converted my chromosomes to integers everything is working now
Thank you for reporting.
Ive been using your software to make manhattan plots and something in your sorting step is inverting the chromosomes. So they are all plotting end - start rather than start - end but still 1-22