Open z626093820 opened 1 year ago
When I use the gff.gff_to_gtf function it reports an error:
bellow is my gff
Ib01g1h maker gene 15818 17820 . + . ID=Ib01g1h00010;Name=Ib01g1h00010 Ib01g1h maker exon 15818 16247 . + 0 ID=Ib01g1h00010.1.exon.1;Parent=Ib01g1h00010.1 Ib01g1h maker exon 17604 17773 . + 2 ID=Ib01g1h00010.1.exon.2;Parent=Ib01g1h00010.1 Ib01g1h maker exon 17815 17820 . + 0 ID=Ib01g1h00010.1.exon.3;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 15818 16247 . + 0 ID=Ib01g1h00010.1.CDS.1;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 17604 17773 . + 2 ID=Ib01g1h00010.1.CDS.2;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 17815 17820 . + 0 ID=Ib01g1h00010.1.CDS.3;Parent=Ib01g1h00010.1 Ib01g1h maker mRNA 15818 17820 . + . ID=Ib01g1h00010.1;Name=Ib01g1h00010.1;Parent=Ib01g1h00010 Ib01g1h maker gene 19878 20534 . + . ID=Ib01g1h00020;Name=Ib01g1h00020 Ib01g1h maker exon 19878 20534 . + 0 ID=Ib01g1h00020.1.exon.1;Parent=Ib01g1h00020.1 Ib01g1h maker CDS 19878 20534 . + 0 ID=Ib01g1h00020.1.CDS.1;Parent=Ib01g1h00020.1 Ib01g1h maker mRNA 19878 20534 . + . ID=Ib01g1h00020.1;Name=Ib01g1h00020.1;Parent=Ib01g1h00020
When I use the gff.gff_to_gtf function it reports an error:![image](https://github.com/reneshbedre/bioinfokit/assets/37371455/b9147238-e8b2-4aae-8d4e-20386314746a)
bellow is my gff
Ib01g1h maker gene 15818 17820 . + . ID=Ib01g1h00010;Name=Ib01g1h00010 Ib01g1h maker exon 15818 16247 . + 0 ID=Ib01g1h00010.1.exon.1;Parent=Ib01g1h00010.1 Ib01g1h maker exon 17604 17773 . + 2 ID=Ib01g1h00010.1.exon.2;Parent=Ib01g1h00010.1 Ib01g1h maker exon 17815 17820 . + 0 ID=Ib01g1h00010.1.exon.3;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 15818 16247 . + 0 ID=Ib01g1h00010.1.CDS.1;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 17604 17773 . + 2 ID=Ib01g1h00010.1.CDS.2;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 17815 17820 . + 0 ID=Ib01g1h00010.1.CDS.3;Parent=Ib01g1h00010.1 Ib01g1h maker mRNA 15818 17820 . + . ID=Ib01g1h00010.1;Name=Ib01g1h00010.1;Parent=Ib01g1h00010 Ib01g1h maker gene 19878 20534 . + . ID=Ib01g1h00020;Name=Ib01g1h00020 Ib01g1h maker exon 19878 20534 . + 0 ID=Ib01g1h00020.1.exon.1;Parent=Ib01g1h00020.1 Ib01g1h maker CDS 19878 20534 . + 0 ID=Ib01g1h00020.1.CDS.1;Parent=Ib01g1h00020.1 Ib01g1h maker mRNA 19878 20534 . + . ID=Ib01g1h00020.1;Name=Ib01g1h00020.1;Parent=Ib01g1h00020