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reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit
MIT License
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Doubts about gff to gtf conversion #67

Open z626093820 opened 1 year ago

z626093820 commented 1 year ago

When I use the gff.gff_to_gtf function it reports an error： image

bellow is my gff

Ib01g1h maker gene 15818 17820 . + . ID=Ib01g1h00010;Name=Ib01g1h00010 Ib01g1h maker exon 15818 16247 . + 0 ID=Ib01g1h00010.1.exon.1;Parent=Ib01g1h00010.1 Ib01g1h maker exon 17604 17773 . + 2 ID=Ib01g1h00010.1.exon.2;Parent=Ib01g1h00010.1 Ib01g1h maker exon 17815 17820 . + 0 ID=Ib01g1h00010.1.exon.3;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 15818 16247 . + 0 ID=Ib01g1h00010.1.CDS.1;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 17604 17773 . + 2 ID=Ib01g1h00010.1.CDS.2;Parent=Ib01g1h00010.1 Ib01g1h maker CDS 17815 17820 . + 0 ID=Ib01g1h00010.1.CDS.3;Parent=Ib01g1h00010.1 Ib01g1h maker mRNA 15818 17820 . + . ID=Ib01g1h00010.1;Name=Ib01g1h00010.1;Parent=Ib01g1h00010 Ib01g1h maker gene 19878 20534 . + . ID=Ib01g1h00020;Name=Ib01g1h00020 Ib01g1h maker exon 19878 20534 . + 0 ID=Ib01g1h00020.1.exon.1;Parent=Ib01g1h00020.1 Ib01g1h maker CDS 19878 20534 . + 0 ID=Ib01g1h00020.1.CDS.1;Parent=Ib01g1h00020.1 Ib01g1h maker mRNA 19878 20534 . + . ID=Ib01g1h00020.1;Name=Ib01g1h00020.1;Parent=Ib01g1h00020