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reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit
MIT License
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gff to gtf file conversion #70

Open Shukla04 opened 6 months ago

Shukla04 commented 6 months ago

Hello I simply used the gff3 to gtf conversion utility and ran into an error. Any help would be appreciated.

what i did import bioinfokit from bioinfokit.analys import gff gff.gff_to_gtf(file="annotation.gff")

The error that follows is: Traceback (most recent call last): File "", line 1, in File "/home/neha/anaconda3/lib/python3.9/site-packages/bioinfokit/analys.py", line 1340, in gff_to_gtf cds_dict_st[transcript_id_cds].append(line[3]) KeyError: 'AT1G01010.1,AT1G01010.1-Protein'

Thanks