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Frequently Asked Questions on R: my personal Ask Just Once system for my friends' R problems...
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Annotation data for GSE33377 (GPL5175) #5

Open nirnn opened 10 years ago

nirnn commented 10 years ago

I'm trying to find annotation data for GSE33377 (GPL5175) with no success.

I've already made various trials:

  1. I used http://ailun.stanford.edu/platformAnnotation.php with the feature list, but it returned an empty file
  2. I tried to download annotation data from ensembl (biomart), but feature list was incomplete (covered only 10% of probes)
  3. I could not locate any Annotation DBI for this GSE (http://www.bioconductor.org/packages/2.13/data/annotation/)

Thanks

renozao commented 10 years ago

You will then have to work with the GPL annotation loaded by GEOquery in the feature data of the ExpressionSet object.

On 9 January 2014 17:04, nirneumark notifications@github.com wrote:

I'm trying to find annotation data for GSE33377 (GPL5175) with no success.

I've already made various trials:

  1. I used http://ailun.stanford.edu/platformAnnotation.php with the feature list, but it returned an empty file
  2. I tried to download annotation data from ensembl (biomart), but feature list was incomplete (covered only 10% of probes)
  3. I could not locate any Annotation DBI for this GSE ( http://www.bioconductor.org/packages/2.13/data/annotation/)

Thanks

— Reply to this email directly or view it on GitHubhttps://github.com/renozao/FAQR/issues/5 .