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replikation / What_the_Phage

WtP: Phage identification via nextflow and docker or singularity
https://mult1fractal.github.io/wtp-documentation/
GNU General Public License v3.0
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Vibrant and virsorter 2 generate duplicate rows for similar contig #157

Closed mult1fractal closed 2 years ago

mult1fractal commented 2 years ago

library(tidyr) wide <- spread(dt, toolname, p_value) Error: Each row of output must be identified by a unique combination of keys. Keys are shared for 2 rows:

  • 256, 257

Full report will fail on both tools

replikation commented 2 years ago

the pain. is there a R solution for it? @AggresiveHayBale do these row contain different information?

AggressiveHayBale commented 2 years ago

We discussed it with Mike and we think its better to solve it outside R and not put a new coat of paint on a bug that wasn't solved.

mult1fractal commented 2 years ago

tools generate now 1 entry/contig