search

replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
40 stars 17 forks source link

Update guppy GPU and CPU version #102

Closed hoelzer closed 3 years ago

hoelzer commented 3 years ago

needs proper testing before merge!

replikation commented 3 years ago
hoelzer commented 3 years ago

I am also not aware of any changes. I will do some runs w/ the current Release and this branch to compare next week

Christian Brandt @.***> schrieb am So., 25. Apr. 2021, 14:27:

  • some changes between medaka model and guppy? I am not aware of any

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/replikation/poreCov/pull/102#issuecomment-826316294, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADN2CZ33XEACAPAIAF2ZT5DTKQDDPANCNFSM43RBVCJA .

hoelzer commented 3 years ago

I experienced issues w/ this new guppy version due to a restructured output folder structure from the guppy basecalling

replikation commented 3 years ago

we have currently cuda errors for this version

replikation commented 3 years ago