Closed hoelzer closed 3 years ago
the size should be at around 180MB
Works also w/ Singularity on your end? I removed the singularity container and also build it manually again
singularity pull docker://...
but this resulted in the same (small) image. I will try again
maybe that's related to the new way to build the Docker container? (node:lts-alpine3.13
baseimage, npm install ...
) which might interfere w/ the Singularity translation?
However, if Singularity worked on your hand that would be strange :)
only tested docker, can you build a singularity image from a Dockerfile? we might want to really add some kind of singularity storage/hub to porecov
Thats the way we are running here the pipeline since the beginning :) Nextflow can take a Docker image and translate and store it as a Singularity image. Otherwiese, we could not use the pipeline on the Cluster here. Up to know, this worked fine.
A Singularity storage Hub would be nice, how is nf-core actually doing this? I think they provide for some pipelines pre-build Singularity images.
I am just running v0.9.2 and it gets somewhat stuck in
I am not sure if this is Singularity-related. The nextclade container looks also kind small
which might be fine. But anyway, 0.9.1 is working fine.
I leave it running but it already stucks in the nextclade step now since 30min
Ah, and here the output of
.command.log
:I also wonder a bit about the
.command.sh
: