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replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
39 stars 16 forks source link

Fix134 #135

Closed replikation closed 3 years ago

replikation commented 3 years ago
hoelzer commented 3 years ago

test is running...

nextflow run replikation/poreCov -r fix134 --nanopolish --fast5 fast5_pass --cachedir /scratch/singularity/poreCov --update -w work --cores 40 --max_cores 120 --krakendb /mnt/scratch_slow04/sc2/common/databases/kraken2/GRCh38.p13_SC2_2021-02-08.tar.gz -profile local,singularity --output results_nanopolish_test
replikation commented 3 years ago