search

replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
40 stars 17 forks source link

Output also the mapping files for QC #14

Closed hoelzer closed 3 years ago

hoelzer commented 3 years ago

I think BAMs are anyway generated for the coverage plots? We just also need them as an output for downstream steps.

@replikation what is actually used for mapping (minimap2?) in the pipeline?

hoelzer commented 3 years ago

done with PR #17