Nanoplot error

[karthick1087]

Hi Just trying with test data example using following command nextflow run replikation/poreCov -profile test_fastq,local,docker -r 0.8.0 I am getting this error read_qc_wf:nanoplot` terminated with an error exit status (127)

[replikation]

hi,

• could u use a more recent version to check if the error still persists (e.e. 0.9.5)?
• otherwise please attach the .command.log file here
• This file is located in in the work dir (the error message should give you the path)

[karthick1087]

Thank you so much!!! Ran perfectly with 0.9.5

[hoelzer]

Great! @replikation/poreCov @.***> then we should likely also update the readme to show a newer version for the test command

On Sat, 4 Sep 2021, 17:20 karthick1087, @.***> wrote:

Thank you so much!!! Ran perfectly with 0.9.5

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[replikation]

done

[hoelzer]

Hi, thx for you interest in poreCov. How much cpu and ram does your machine have?

Also, can you please check the work directory for the folder that runs the NanoPlot process? In the terminal you can see the prefix of the corresponding folder where the NanoPlot process runs, something like

ab/wu6h8s*

In this folder, you should find a .command.log file with maybe more information about the error.

Also, you could try a newer release version of the pipeline (such as 0.10.2) but normally the release you tried should still be stable.

On Sat, 4 Sep 2021, 13:16 karthick1087, @.***> wrote:

Hi Just trying with test data example using following command nextflow run replikation/poreCov -profile test_fastq,local,docker -r 0.8.0 I am getting this error read_qc_wf:nanoplot` terminated with an error exit status (127)

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/replikation/poreCov/issues/149, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADN2CZ6TVUNHVKEEZLQWOWLUAH5YHANCNFSM5DNGBQCQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.