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replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
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Average coverage #152

Closed ebarretoh closed 2 years ago

ebarretoh commented 3 years ago

Hi, Is it posible to find in the pipeline results the average coverage? May be to add it too the summary report?

replikation commented 2 years ago

for each sample you mean? currently, there is a coverage file and the coverage plots for each samples as a simple "average coverage" is misleading for amplicon-based assembly