replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
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Add guppy/medaka models, print out 'Description' column #155

Closed RaverJay closed 2 years ago

RaverJay commented 2 years ago

Fixes #136 (and half of #142)

Report now includes:

image

replikation commented 2 years ago

nice work, ill keep this open because we need the same for nextclade, and there is currently an "auto build" (similar to pangolin) in the works (nearly done). it will be also nanozoo/nextclade:nextcladeversion--databaseversion

hoelzer commented 2 years ago

Awesome, thx @RaverJay ! The "Description" col in the samplesheet is helpful - likely worth mentioning this feature also in the readme?

hoelzer commented 2 years ago

Here: https://github.com/replikation/poreCov#sample-sheet

RaverJay commented 2 years ago

Awesome, thx @RaverJay ! The "Description" col in the samplesheet is helpful - likely worth mentioning this feature also in the readme?

Done

hoelzer commented 2 years ago

Awesome, thx @RaverJay ! The "Description" col in the samplesheet is helpful - likely worth mentioning this feature also in the readme?

Done

Superb 👍

replikation commented 2 years ago

@RaverJay great work