I had to adjust some parameters to get Guppy running on an HPC cluster node via SLURM and with URL restrictions but I think this is generally useful for executing poreCov w/ basecalling on SLURM
1) use --disable_pings for the guppy commands to just not send information to ONT ;)
2) add clusterOptions for SLURM to give the basecalling process enough time (otherwise the job might be killed depending on the SLURM configuration)
I had to adjust some parameters to get Guppy running on an HPC cluster node via SLURM and with URL restrictions but I think this is generally useful for executing poreCov w/ basecalling on SLURM
1) use
--disable_pingsfor the guppy commands to just not send information to ONT ;) 2) add clusterOptions for SLURM to give the basecalling process enough time (otherwise the job might be killed depending on the SLURM configuration)