seqrs V4.1 support and singularity envWhitelist

replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data

https://case-group.github.io/

GNU General Public License v3.0

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Closed MarieLataretu closed 2 years ago

MarieLataretu commented 2 years ago

added a seqrs call for ARTIC primer V4.1
added envWhitelist in the singularity profile (nextflow.config)
- allows to use e.g. wget on HPCs
- has no effects on local execution
- added a note in the help and readme

I haven't manually run the CI tests yet.

replikation commented 2 years ago