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replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
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Updated Midnight primer kit #209

Closed hoelzer closed 2 years ago

hoelzer commented 2 years ago

See: https://twitter.com/nanopore/status/1486386995924451332

So likely an updated BED is also needed then (V1200.1 ? :) )

replikation commented 2 years ago

any bed files?

hoelzer commented 2 years ago

not so far and that I am aware of

omarkr8 commented 2 years ago

Perhaps not needed? the additional primer is an alternative to Pool B Left 28. so they occupy the same "amplicon slot".

do degenerate primer beds exist?

replikation commented 2 years ago

ah good to know, thx @omarkr8 not sure about the degenerated primer beds