replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data

https://case-group.github.io/

GNU General Public License v3.0

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Custom bed #211

Closed replikation closed 2 years ago

replikation commented 2 years ago

Done

[x] fixed Varskip2 primer not working for #210
[x] adding custom bed files for medaka
[x] adding custom bed files for nanopolish
[x] covarplots for custom bed files

input via --primerV primer.bed

replikation commented 2 years ago

@hoelzer if working via singularity on your end ill merge and build up a release. did not identify any bugs while testing all possible run options. this PR contains also #208

hoelzer commented 2 years ago

@replikation works! Feuer frei