replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
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MN908947.3 vs. NC_045512.2 #219

Open MarieLataretu opened 2 years ago

MarieLataretu commented 2 years ago

Is your feature request related to a problem? Please describe. I wanted to look at the mappings and selected the "wrong" reference file NC_045512.2.fasta from the /data/reference_nCov19/ folder.

Describe the solution you'd like Change the files in /data/reference_nCov19/ to MN908947.3 id files.

Describe alternatives you've considered Add a readme to /data/reference_nCov19/ and state that these files are not used and where to find the matching reference.

Additional context The id or a files containing the id NC_045512.2.fasta are never used in the workflow.