replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
39 stars 17 forks source link

"split-fasta"-process fails due to leading empty line #229

Closed DataSpott closed 1 year ago

DataSpott commented 2 years ago

"split-fasta"-process fails if there if the first line of a fasta-file is empty (may also if there are empty lines in between).

Error code

[57/73e98f] NOTE: Process split_fasta (1) terminated with an error exit status (1) -- Error is ignored

Additional Information

Deleting the leading empty line in the fasta-file solved the problem. "split-fasta"-process will need an option to remove such lines itself to prevent failure.