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poreCov
SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
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[Enhancment] publish more logs/intermediate files from ARTIC
#252
Closed
MarieLataretu
closed
1 year ago
MarieLataretu
commented
1 year ago
publishes the following documents for each sample
primersitereport.txt
-> variants in primer binding sites
coverage_mask.txt
-> low coverage regions
fail.vcf
-> filtered and failed variants that get masked with Ns
solves #245
primersitereport.txt-> variants in primer binding sitescoverage_mask.txt-> low coverage regionsfail.vcf-> filtered and failed variants that get masked with Ns