fixed disabling of artic normalisation

replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data

https://case-group.github.io/

GNU General Public License v3.0

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fixed disabling of artic normalisation #258

Closed MarieLataretu closed 1 year ago

MarieLataretu commented 1 year ago

If the disabling was activated in the pipeline (--artic_normalize False), no parameter was handed over to the artic pipeline, so that artic used the default value of 200. Normalisation is now correctly turned off by passing --normalise 0 to the artic pipeline.

hoelzer commented 1 year ago

Looks good @MarieLataretu ! @replikation is on holiday the next week's so please feel free to merge and do a release

Otherwise this maybe needs to wait until October :)