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replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
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rki conform metadata output #27

Closed replikation closed 3 years ago

replikation commented 3 years ago 
IMS_ID;SENDING_LAB;DATE_DRAW;SEQ_TYPE;SEQ_REASON;SAMPLE_TYPE;OWN_FASTA_ID
IMS-12345-CVDP-00001;12346;20210119;ILLUMINA;X;s001;A-899
IMS-12345-CVDP-00002;12346;20210119;OXFORD_NANOPORE;Y;s006;A_900
IMS-12345-CVDP-00003;12346;20210119;OTHER;A[B.1.1.7/B.1.351];s017;A.901
replikation commented 3 years ago

e.g. --rki - activates this table which will be autoprepared

replikation commented 3 years ago

source