Report percentage of Ns

replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data

https://case-group.github.io/

GNU General Public License v3.0

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Report percentage of Ns #66

Closed hoelzer closed 3 years ago

hoelzer commented 3 years ago

Maybe also rather present %Ns rather than absolute numbers (will make it easier for people who have a hard time quickly dividing by 29902)?

Or both? I know that you are likely just taking the information from president so I could also escalate that to that tool so you could then just grep it from the report.tsv?

replikation commented 3 years ago

sounds good like %(Number), @RaverJay what would be easier for you calculating this or president extension?

RaverJay commented 3 years ago

I had both in initially and found it confusing and removed it. Imho the number is easier to understand than the percentage. Can add it back in if you want

hoelzer commented 3 years ago

@RaverJay would be nice to have the percentage Ns in again. It's what people are mainly looking for bc/ DESH, GISAID, ... have filters such as <x% Ns - thx!

RaverJay commented 3 years ago

On it

hoelzer commented 3 years ago

On it

Always a pleasure working w/ you guys