FTmicrobiome$PF$choice not existing

reptalex / phylofactor

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Closed gvdr closed 5 years ago

gvdr commented 5 years ago

When I try to follow the tutorial

pf <- FTmicrobiome$PF

produces the error Error in if (PF$choice == "var") { : argument is of length zero. I think it is because PF does not have choice.

reptalex commented 5 years ago

Gotcha - thanks for catching that. The old phylofactor objects didn't record the choices ('var','F','max.var') which are used in summary functions.

I've uploaded new phylofactor objects which should work - reinstalling the package should make the tutorial flow smoothly.