missing tools

[bgruening]

The following is a list of tools that are missing or are not easy to map. A few of them are high-profile tools.

xref: https://github.com/galaxyproject/tools-iuc/pull/3411/files

annotatemyids anndata barcode_splitter basil bax2bam bctools berokka python-bioext biom_format bwameth cat chromeister codeml colibread crispr_studio crossmap datamash ena-upload-cli enasearch export2graphlan fargene fastani fastp fastqe fermi2 fitlong flair mutect2 gecko genehunter genrich goslimmer gprofiler2 graphlan gubbins hansel hicexplorer hivclustering humann2 idr iqtree ivar jq kcalign kma lofreq lorikeet lumpy_sv maxbin2 medaka dreme -- meme_meme and meme_fimo exist meme_chip miniasm mitobim moabs mothur msaboot multigps nanoplot nanopolishcomp nonpareil novoplasty nudup ococo odgi picrust pipelign pizzly porechop progressivemauve proteinortho pureclip pyGenomeTracks qfilt raven-assembler sarscov2formatter sarscov2summary seacr seqwish shasta slamdunk alleyoop snp-dists socru spaln spyboat stacks2 --> is that stacks1 star fusion structureharvester swiftlink tb_variant_filter tbl2gff3 tetoolkit_tetranscripts tetyper tn93 transtermhp valet vardict_java variant_analyzer vegan vg volcanoplot vsnp simple_weather xpath zerone

https://github.com/wtsi-hpag/Scaff10X

[supernord]

Hi @bgruening - is this something we could converge on and address together with the bio.tools team? For those entries that are still missing.

[supernord]

@hmenager @hansioan

[bgruening]

Of course. My fav way would be that we add those tools to this repo and bio.tools fetches those from this repo. But I'm not sure we are there yet.