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researchapps / polysolver

Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (HLA-A, -B, -C)
MIT License
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how it works? #1

Open GenomicHub opened 7 years ago

GenomicHub commented 7 years ago

Hi, I am a naive for singularity but i want to use polysolver. I downloaded singularity-polysolver and installed to ubuntu 15.10. following the instruction, sudo singularity create --size 4000 polysolver.img ###works sudo singularity bootstrap polysolver.img Singularity ### error ########################################### wei@lc22up:~/NGS_software/singularity$ sudo singularity bootstrap polysolver.img Singularity ERROR : Could not open bootstrap definition file Singularity: No such file or directory ERROR : Could not open bootstrap definition file ABORT : Retval = 255 ############################################################ what is the problem and how to solve?

Thanks,

Wei

vsoch commented 7 years ago

If you read the error message, it is telling you that it cannot find the file Singularity. That is this file. Make sure you cd into the folder with that file, or provide the full path to it, in the bootstrap command.