How to prepare abc_complete.fasta?

researchapps / polysolver

Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (HLA-A, -B, -C)

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How to prepare abc_complete.fasta? #6

Open lijanan opened 5 years ago

lijanan commented 5 years ago

Hi,

Abc_complete.fasta was created by the method in paper. But i can't find scripts to do this. Can you guide me to do this? Others, abc_38_both_pm_update.uniq and abc_v14.uniq, how can we get these files?

Very thanks.

vsoch commented 5 years ago

hey @lijanan ! I know just as much as you about the manuscript, unfortunately the work is not very reproducible. The most I can do is direct you to https://software.broadinstitute.org/cancer/cga/polysolver. If you can reach the authors by some manner via a help forum or contact, please come back and post what you learn here. Sorry I can't be of more help!

lijanan commented 5 years ago

@vsoch, very thanks quickly reply. I try to contact authors.