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resendislab / corda

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
http://resendislab.github.io/corda
MIT License
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corda metrics should be obtainable for the reversible model as well #1

Closed cdiener closed 8 years ago

cdiener commented 8 years ago

Currently print called for a CORDA optimizer instance will give infos in the following form:

build status: reconstruction complete
Inc. reactions: 2238/5351
 - unclear: 657/2485
 - exclude: 95/863
 - low and medium: 922/1345
 - high: 564/658

However, this is based on the irreversible models and does not consider that the reversible reaction is added along with all included reactions. So it would be better to change those metrics to the reversible case or allow for an option to specify the behavior.

cdiener commented 8 years ago

done in 392fcce68d7aa476c000a25f0109b163d981756d.