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resplab / epicR

R package for the Evaluation Platform in COPD (EPIC), an agent-based whole-disease model for projection of health and economic outcomes and COPD interventions.
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cannot run a single simulation #105

Closed tyhlee closed 2 years ago

tyhlee commented 4 years ago

Am I missing something? How do you use this package? `

library(epicR) init_session() Initializing the session [1] 0 run(max_n_agents = 100000,input=init_input()$values) [1] 0 Cget_all_events() data frame with 0 columns and 0 rows Cget_all_events_matrix() id local_time female time_at_creation age_at_creation pack_years gold event FEV1 FEV1_slope FEV1_acceleration pred_FEV1 smoking_status localtime_at_COPD age_at_COPD weight_at_COPD height followup_after_COPD FEV1_baseline exac_status cough phlegm wheeze dyspnea gpvisits diagnosis time_at_diagnosis medication_status case_detection cumul_cost cumul_qaly get_all_events() Error in matrix(unlist(x), nrow = length(x), byrow = T) : 'data' must be of a vector type, was 'NULL' get_all_vars() Error in terms.formula(formula, data = data) : argument is not a valid model terminate_session() Terminating the session [1] 0 `

aminadibi commented 4 years ago

By default event matrix is not collected. For the quickest fix, clone the repo, turn on event mode in core.R and recompile locally.