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resplab / epicR

R package for the Evaluation Platform in COPD (EPIC), an agent-based whole-disease model for projection of health and economic outcomes and COPD interventions.
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Recalibration #116

Closed safaahmadian closed 2 years ago

safaahmadian commented 2 years ago

recalibrated the equation for rate and severity of exacerbations and increased the probability of inpatient_diagnosis. The recalibration_validity_plot makes all the plots needed for checking the validity of rate of exacerbations. Note: the new calibration works only when the case_detection is off.

aminadibi commented 2 years ago

recalibration_validity_plots.R added in https://github.com/resplab/epicR/pull/116/commits/564385bf88edf5f49db9c80a97fcd373ff48bd97 did not meet package standards and was breaking the check. Removed in https://github.com/resplab/epicR/pull/116/commits/1479a657fbf06e6627b7b4e9df15be24f796f870. The content should be added as new validation functions, following epic's conventions, to the validation.R file.