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rethomics / damr

Read TriKinetics' DAM data in R
http://rethomics.github.io
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Load_dam error help request #36

Closed katenevin21 closed 3 years ago

katenevin21 commented 3 years ago

Hi, I am trying to use the rethomics system for the first time to analyze my DAM data. I am having an issue when trying to load the data and I was wondering if someone could possibly point out where I am going wrong? My code results in the error, Error in find_dam_first_last_lines(path, start_datetime, stop_datetime, : No data in selected date range

Here is my code attached below: library(damr) DATA_DIR <- "C:/Users/Kate/OneDrive/Documents/R/23" list.files(DATA_DIR, pattern= ".txt|.csv") setwd(DATA_DIR) metadata <- fread("metadata23.csv") metadata <- link_dam_metadata(metadata, result_dir = DATA_DIR) dt <- load_dam(metadata, date_format = "%d %b %y")

Here is my metadata: region_id DAM file start_datetime stop_datetime sex genotype replicate 1 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 2 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 3 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 4 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 5 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 6 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 7 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 8 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 9 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 10 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 11 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 12 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 13 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 14 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 15 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 16 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 17 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 18 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 19 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 20 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 21 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 22 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 23 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 24 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 25 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 26 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 27 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 28 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 29 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 30 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 31 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1 32 23 Monitor23.txt 2017-10-25 06:05:00 2017-10-30 10:27:00 male A 1

My DAM data is attached Monitor23.txt

Thank you!

katenevin21 commented 3 years ago

Never mind! I had written November as the 10th month in the metadata, instead of the 11th month.

mantouyangmeng commented 5 months ago

Hi, I'm trying to run the damr package, and when I run load_dam(metadata), I now keep getting "Error in find_dam_first_last_lines(path, start_datetime, stop_datetime,. No data in selected date range". I've searched for ways to fix this (such as following the help provided in the error), but it still continues to report the error, and was wondering if you've encountered this problem?