Hello RevBayes team!
The function fnHiddenStateRateMatrix that receives the Q and R matrices for transitions within and between hidden state does not account for possible asymmetrical transitions in the within each hidden state. For example
but instead, entry [4,3] should be 0.715 instead it is 0.7287 and of course the negative sum at [4,4] should change as well.
This is because the function only propagates vectors of dimension 2 and not four.
Hello RevBayes team! The function fnHiddenStateRateMatrix that receives the Q and R matrices for transitions within and between hidden state does not account for possible asymmetrical transitions in the within each hidden state. For example
but instead, entry [4,3] should be 0.715 instead it is 0.7287 and of course the negative sum at [4,4] should change as well. This is because the function only propagates vectors of dimension 2 and not four.