I have recently come across an error that occurred when my genotypes (accidentally) have a column of not 0,1 and 2s.
The error message from JWAS was that my “Marker effects variance is negative!” it would be helpful if when JWAS is reading in the genotypes it would check each column and let me know why there was an error as the above error message did not help me figure out what was causing the issue.
reworkhow
commented
3 years ago
I have recently come across an error that occurred when my genotypes (accidentally) have a column of not 0,1 and 2s. The error message from JWAS was that my “Marker effects variance is negative!” it would be helpful if when JWAS is reading in the genotypes it would check each column and let me know why there was an error as the above error message did not help me figure out what was causing the issue.