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reznik-lab / mtdna-dlp

scripts to generate figures/tables for mtDNA DLP+ paper
MIT License
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The CloneAssignClone in the runmtclone.py #3

Open zhuangxuehan opened 1 month ago

zhuangxuehan commented 1 month ago

Hi,

I am trying to use runmtclone.py in my data, but I can't install the module "CloneAssignClone" imported in line 17 of runmtclone.py, I didn't find it in the PyPI or Github, would you tell me how to install it? or is it a function defined by the authors? if so, could you also provide this?

Thanks a lot!

mik2044 commented 4 weeks ago

Hi,

I’ve uploaded the necessary files, CloneAssign.py and CloneAssignClone.py, which are required for running runmtclone.py. These scripts are from the TreeAlign repository, which you can find below: https://github.com/shahcompbio/TreeAlign/tree/master

To help you get started, I’ve also included test data under mtdna-dlp/data/example. I hope this helps! Feel free to reach out with any further questions.