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rfael0cm / RTIGER

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Error in loading setting up Julia #6

Open mnshgl0110 opened 2 years ago

mnshgl0110 commented 2 years ago

Hi Rafa,

I am trying to use rtiger. For this, I created a new environment and then installed RTIGER using the README. It installed successfully, but when I try to use it, I am getting error in the setupJulia() command.

Julia version 1.0.5 at location /srv/netscratch/dep_mercier/grp_schneeberger/software/julia-1.0.5/bin will be used.
Loading setup script for JuliaCall...
WARNING: replacing module JuliaCall.
LoadError("/srv/netscratch/dep_mercier/grp_schneeberger/projects/SynSearch/tests/rtiger_09_03_22/renv/library/R-4.0/x86_64-pc-linux-gnu/JuliaCall/julia/setup.jl", 83, ErrorException("could not load library \"/opt/share/software/packages/R-4.0.4-debian-9/lib/R/lib/libR.so\"\nlibgfortran.so.3: cannot open shared object file: No such file or directory")) Error in .julia$cmd(paste0(Rhomeset, "Base.include(Main,\"", system.file("julia/setup.jl",  : 
  Error happens when you try to execute command ENV["R_HOME"] = "/opt/share/software/packages/R-4.0.4-debian-10/lib/R";Base.include(Main,"/srv/netscratch/dep_mercier/grp_schneeberger/projects/SynSearch/tests/rtiger_09_03_22/renv/library/R-4.0/x86_64-pc-linux-gnu/JuliaCall/julia/setup.jl") in Julia.
                        To have more helpful error messages,
                        you could considering running the command in Julia directly

Best Manish

rfael0cm commented 2 years ago

Hey Manish, are you still having this problem? Was it solved by the previous issue? Let me know if I can close it. Best, Rafa

mnshgl0110 commented 1 year ago

For future reference: the possible solution is https://github.com/rfael0cm/RTIGER/issues/2#issuecomment-817862339