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rfhb / ctrdata

Aggregate and analyse information on clinical trials from public registers
https://rfhb.github.io/ctrdata/
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invalid numeric literal when accumulating information in database #31

Closed rfhb closed 8 months ago

rfhb commented 8 months ago

This concerns loading certain clinical trial information from CTIS. 

(3/5) Downloading and processing additional data:
publicevents, summary, layperson, csr, cm, inspections, publicevaluation
Error: Invalid numeric literal at line 1, column 37048550

9. jqr_feed(program, json)
8. writeLines(buf, out, useBytes = TRUE)
7. callback(jqr_feed(program, json))
6. jqr.connection(x, query = query, flags = flags, out = out)
5. jq.connection(file(fPartIPartsIINdjson), " { ctNumber: .ctNumber, applicationIds: [ .applications[] | .id ] } ",
flags = jqr::jq_flags(pretty = FALSE), out = fApplicationsJson)
4. jqr::jq(file(fPartIPartsIINdjson), " { ctNumber: .ctNumber, applicationIds: [ .applications[] | .id ] } ",
flags = jqr::jq_flags(pretty = FALSE), out = fApplicationsJson) at ctrLoadQueryIntoDbCtis.R#373
3. (function (queryterm = queryterm, register, euctrresults, euctrresultshistory,
documents.path, documents.regexp, annotation.text, annotation.mode,
only.count, con, verbose, queryupdateterm) { ...
rfhb commented 8 months ago

More interesting than anticipated, curl::multi_download return values had not been handled well. Closed with daa46693f0eb53ecb9e37bc2f2bbe38596e34bef.