rformassspectrometry / MsIO

Serializing/importing mass spectrometry data objects eventually using language-agnostic formats.
https://rformassspectrometry.github.io/MsIO
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MetaboLightsParam addition #15

Closed philouail closed 2 months ago

philouail commented 2 months ago

Here is the addition for MetaboLights Import support.

Check out the interactive menu for the assay selection ! I think I like it aha, but I can also easily replace it by an extra param if that is more "accepted".

I think the documentation will be updated when the MetaboLightsBackend is available.. Let's see we can discuss how we combine them when that happens.

I don't really know how to deal with allll the columns that the IsaTab files have, I think they are mostly useless but I don't think it's our job to determine what to keep and what not to keep.. So i just removed the ones that only had NAs for now.