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rformassspectrometry
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QFeatures
Quantitative features for mass spectrometry data
https://RforMassSpectrometry.github.io/QFeatures/
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colData is not updated in SE objects when aggregating across levels
#168
lmsimp
closed
2 years ago
2
Feature request: updateFvarLabels and updateSampleNames
#167
lmsimp
closed
2 years ago
2
Feature request: implement a `c()` method
#166
cvanderaa
closed
2 years ago
2
Improve 'addAssay()' (#104)
#165
cvanderaa
closed
2 years ago
3
Create QFeatures object from any sets of features/peptides/proteins tables
#164
annaquaglieri16
opened
2 years ago
0
Issue162: impute adds a new assay instead of replacing values
#163
cvanderaa
closed
2 years ago
0
Add new assay to a `QFeatures` object when calling `impute()`
#162
cvanderaa
closed
2 years ago
2
@hits contains links that point to missing features
#161
Maux82
closed
2 years ago
5
Enforcing adjacency matrix validity
#160
lgatto
opened
2 years ago
0
Agregation failed with adjMat containing empty columns (proteins)
#159
samWieczorek
closed
2 years ago
3
Agregation with adjacency matrix of shared peptides
#158
samWieczorek
closed
2 years ago
2
Assays: matrix and/or Matrix
#157
lgatto
closed
2 years ago
6
Address message about possible inefficient code
#156
lgatto
opened
3 years ago
0
This PR enables aggregation by matrix on SEs and QFeatures
#155
lgatto
closed
2 years ago
0
Add an adjacencyMatrix setter
#154
lgatto
closed
3 years ago
1
Implmented an updateObject() method for QFeatures objects (issue #152)
#153
cvanderaa
closed
3 years ago
6
feat: QFeatures needs to implement an `updateObject()` method
#152
cvanderaa
closed
3 years ago
4
Deprecation warnings
#151
cvanderaa
closed
3 years ago
2
filterFeatures() to check existence of rowData variables
#150
lgatto
closed
2 years ago
2
Feature request: improve missing data handling
#149
cvanderaa
opened
3 years ago
0
Feature request: include functionality for spike-ins
#148
cvanderaa
opened
3 years ago
0
Issue 146: improve QFeatures plot function and adapt vignette
#147
cvanderaa
closed
3 years ago
1
QFeatures visualisation vignette
#146
lgatto
closed
3 years ago
2
new gh devel version
#145
lgatto
closed
3 years ago
0
Create a visualization vignette and add a plot function for QFeatures objects (#43)
#144
cvanderaa
closed
3 years ago
0
bump gh devel version
#143
lgatto
closed
3 years ago
0
Fixed bug that produced invalid AssayLinks when using filterNA (cf #141)
#142
cvanderaa
closed
3 years ago
1
@hits contains links that point to missing features
#141
lgatto
closed
3 years ago
4
new gh devel version
#140
lgatto
closed
3 years ago
0
Improved validity checks and solve subsetting issue
#139
cvanderaa
closed
3 years ago
10
update news
#138
lgatto
closed
3 years ago
0
fix: solve build issue
#137
cvanderaa
closed
3 years ago
0
add package logo
#136
lgatto
closed
3 years ago
0
feature request: set values below a threshold as NA
#135
cvanderaa
opened
3 years ago
1
Improved functionality for rowData manipulation
#134
cvanderaa
closed
3 years ago
5
Add replaceRowDataCols and removeRowDataCols
#133
cvanderaa
closed
3 years ago
1
fix: fixed unexpected behavior when ecol is logical
#132
cvanderaa
closed
3 years ago
1
feat: added 'countUniqueFeatures'
#131
cvanderaa
closed
3 years ago
0
combineRows and combineCols methods
#130
lgatto
opened
3 years ago
0
refactor: adapted subsetting to behave as MultiAssayExperiment (issue #128)
#129
cvanderaa
closed
3 years ago
0
Subsetting on features should not drop assays
#128
cvanderaa
closed
3 years ago
0
fix: avoided warnings thrown by 'MultiAssayExperiment'
#127
cvanderaa
closed
3 years ago
4
refactor: optimized 'infIsNA' and 'zeroIsNA'
#126
cvanderaa
closed
3 years ago
8
Check fails on Bioconductor servers
#125
lgatto
closed
3 years ago
6
Shiny Qfeatures
#124
demar01
closed
8 months ago
3
Robust summary aggregation is very slow for SCP data
#123
cvanderaa
opened
3 years ago
1
ci: install magick dep
#122
lgatto
closed
3 years ago
0
custom imputation functions
#121
ococrook
closed
3 years ago
4
doc: update processing vignette
#120
lgatto
closed
3 years ago
0
Issue118: fix nNA
#119
cvanderaa
closed
4 years ago
2
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